Scaffold Ga0182018_10097463

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10097463
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100974631	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQ
Ga0182018_100974632	F003764	GAG	MQIQLDSPYAHDENPAALLAGAEIEAAHLSRSLKIVRLWNQSSALPQSRHDEMIEEEQRLANLYVAIIFEIGSAFGIEQADELKVHIEAACILDDWECPPAEQGFLFPIPNYSATEASPATARK*
Ga0182018_100974633	F004301	GGAG	MTTMQFSLFDVRPAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ*
Ga0182018_100974634	F017951	N/A	RHDVHQASREPYPGTETTMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPSSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESFQ*