Scaffold Ga0182018_10052991

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10052991
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2475
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001851	Metagenome / Metatranscriptome	626	Y
F023459	Metagenome / Metatranscriptome	210	Y
F025559	Metagenome / Metatranscriptome	201	Y
F090917	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100529912	F025559	GGGGG	MEPVLHSLQPVLRCALILGLSLSVFAQIPAAPDASVVLTDRKAPEFSLTVLPPARAGRLVFDFRGIRIGDEMKEAERKFLALNVPSLSSNPGLCGSDGIHRIETCTDVLDTGE*
Ga0182018_100529913	F090917	GAG	MSTGRRTRGNTYNSVVLALAAKYGSPRQTRNQVLLQCNGVETGSSGELLRWLNGDQYMEGSEIERSISIGSRALDATIDEQESVYERN*
Ga0182018_100529914	F001851	AGGAG	MSAISIPFELLILVFVILLLHWMRTLKPQLAAFRSQRMCPSCGLITSRRKTSCLECGHSFTAVSVTPVL*
Ga0182018_100529915	F023459	AGGAG	MLVAEKAVIALSWVSVRDRLPFDGHECVFICRNPNSNELRRAIGYRLHGNWEIEDRALENCDVRAWLKLPSTPSDI*