Scaffold Ga0182018_10021877

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10021877
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4200
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021139	Metagenome / Metatranscriptome	220	Y
F026322	Metagenome / Metatranscriptome	198	Y
F069114	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100218771	F069114	AGGA	MADDQDYSTFVSGEDETSRLLKKILSPAEAQSLVLPPPNHAPASGPGESTPLTGSLAKPPSQAIPSRAPAYDEVKPARPEQSMPMRSGLAGYFVNSAPIATPDRSGDPQYVKVSSHGQAGYLPKANLRLAQQIDKNLEVLDEG*
Ga0182018_100218773	F021139	AGG	MRRITLRQATREDWPAIQRLHLEHQAAQGTNYELPDLFGPAIAIALVGVEESGTIRNCIYVETIAELRFVGCDPKATAFCRREIEGLSYVLKLQGFRWLECFVPRQLKKMIQKPLRRAGFDCVDRELAHFAKDLRGRA*
Ga0182018_100218774	F026322	GGAGG	MYSLHEQYVDMASGFHVIELRDERGHRHLIQLAIGHDSCPACGAVHPKDNLETLDPAAAIAGVNEALNTSQRQMLTYAGKHGLRVR*