Scaffold Ga0182018_10005172

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10005172
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10604
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002448	Metagenome / Metatranscriptome	558	Y
F007294	Metagenome / Metatranscriptome	353	Y
F046491	Metagenome / Metatranscriptome	151	Y
F053728	Metagenome	140	Y
F088082	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000517210	F088082	AGGA	MSISEIAEALERAQRQGADKDRPEGSRYAVFSDTQLQTMARDLRLASADRPDVETFGVQKQ*
Ga0182018_1000517212	F007294	GGAG	MALTLAQLQANLDAINTQIGDPTYSVHFPDGRSVTYRSLDDLNKAKATLEEDIRVASGATGGRVRLAQTKRGDGPSGPEQWRW*
Ga0182018_100051723	F002448	N/A	MISPKIILAEWVASLQTLPNLVEAIGGDPTTIQYYSENTTVFGQATQANVRLAVLGMPPGSIMVVWQGTDRGRLGNALVFVHEFSLYLRAPETGTAGYEDLFNLIVNDTPAGGSLKMLHLQVDPGCEPMDFYLPSARRNTIVISADGATFEYFEVAARLIESYNP*
Ga0182018_100051724	F046491	N/A	MSGWPTISANANRFMQNAFGEPVVYQSMQAGLAVGAPATIVVVRRIRERMEAGAVASVEEIELNPVDLPIPVQRGDIVAAWGAAFSVTTVRQPDPYGMVHVTLTLQPS*
Ga0182018_100051729	F053728	N/A	VTAIWNWFGRLVGFGAADAGPKSFMALAREPRSRSKLKTSGLYVVETDFAVTPDSYNNLQAMLDVVREKYDLDFLILEPGFKLKRFDDY*