Basic Information | |
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Taxon OID | 3300014489 Open in IMG/M |
Scaffold ID | Ga0182018_10004157 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12415 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001403 | Metagenome / Metatranscriptome | 704 | Y |
F050928 | Metagenome / Metatranscriptome | 144 | Y |
F071890 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182018_100041573 | F071890 | GAG | MTNDSTEVSCDRCGQTFSAFLHQMRDQNAEVVCPNCRERLDCNPPKDAKPAAGAGPVKKTN* |
Ga0182018_100041575 | F050928 | GGAG | MARPFAEIVRVGNVSNRGAVLMGMRSKVQSGDLLDVQLGASRAQFRIVWLSLSGEAGIEALAFEPPILGIGLPEVFEMAATG* |
Ga0182018_100041579 | F001403 | GGA | METSSFDLAYLESDPRTKQPSACVYMKAGGRADYAGITAGKLVSAPCLNFIELDAEIRRLHAELDEIRARAKKKFYRAYSAVAGA* |
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