Scaffold Ga0182018_10002603

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10002603
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17672
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029161	Metagenome / Metatranscriptome	189	Y
F046778	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000260310	F029161	AGGAGG	MFDSLADRIRQDDGPPVKTSVRLIRMAMVVLVAVVLFGGLYMVVQHLE*
Ga0182018_100026035	F046778	GAG	MYRPLALFLLPVSLILAQQYPLIGRWRSSEASPSGVSSIFEFRADNQLESSSAVVSDGKYRLVGTDTILLQLDTSREEKLELEWDNQDRARIEDEAAGKSRELARVGKSSDNNNPLTGEWSTQREWKGAKYPARISFFPDERVLCVVTLRTEHGRYSTQSSNIRLEIAGRPLVEGTFAMTGNRLTLPNPKGGASGFDRF*