Scaffold Ga0182018_10001615

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10001615
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25211
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F041733	Metagenome / Metatranscriptome	159	Y
F045057	Metagenome	153	Y
F045709	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100016151	F045709	N/A	PSQKGSFLAGVGLWVLIWASLWKADDIGEAMRIQRWFNSTRCLRWISQHKSTSLLGTELINYGSHGLDPLGVSFSLGGTLVNVLVIYLLLPCLETLLHRRGTVSSIQ*
Ga0182018_100016152	F014894	AGGAGG	MSIGVPGISMYFDHSQVKPFIKDHSKKAKEVFNERVVPAVIRGTCKALEVVANNTADVHDYLIAKIKNKQSV*
Ga0182018_100016156	F045057	GGAGG	MMRDTSIRESLTQKQWDSIFYGCPGAWAGNKPEPNSQGSIVIDGGKILAAVQYLNRQRLRVLFAKAPLPEIWCSDGGIILGIGLRY*
Ga0182018_100016157	F041733	AGGAG	MLVIKVDGNKKITVTDLLICGVLGAAWLPLGIAAAAGIGGYKYWQSKTENLVDADGKDHPEEVKKLKS*