Scaffold Ga0182018

Basic Information
Taxon OID	3300014489 Open in IMG/M
Scaffold ID	Ga0182018_10001463 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014489 Open in IMG/M

Scaffold ID

Ga0182018_10001463 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26717
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

26717

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F015314	Metagenome / Metatranscriptome	255	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000146313	F003186	GAGG	VINPKTILGEWVTALQSCPDLVTAVGGDGNNIRAFMEGLATDNNLRLAILQTPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSSIPTGAPSWSSLLHFQIDPNCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0182018_1000146314	F002261	GGA	MGNWPTIEALVDGVMLQTFGEPVVYQPVQAGAAQGDPFTVTAIRHLRPREESGAVASFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRAS*
Ga0182018_1000146317	F015314	GGCGG	MMLRRESWARLTRSLVPPLYVLRPLQGFTPSDIGDEYPAPDATNKVQLTRARQLYEQRRIGTQAEVERALSKLPKQEPAKPGKEKRHGSQSGKNTR*
Ga0182018_100014636	F000335	GAG	MPASLCTAFTELREYAQLQNQFHDGTIQRSQLAQTSRRTFRLSKRLSASLLSALYSFWVSQNAGLTPFAFYNPFDVAMGQQIGSNYDPTGNNTQGRVTVVFRGNWAQSTDISRSNVQGLNLVEVA*
Ga0182018_100014638	F000451	AGG	MLRTLSRLKVIMARFQTVITRARFVYSPYTATEMQGFAQVLTDAIRARIQHGQNIYDQAAAPLKPGLPGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDESLPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182018_10001463

Overview

Ecosystem & Geography

Associated Families

Sequences