Scaffold Ga0182018_10000414

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10000414
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55951
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (55.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022319	Metagenome / Metatranscriptome	215	Y
F047185	Metagenome / Metatranscriptome	150	Y
F056644	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100004142	F047185	N/A	MQVPIAITKQAQIKAAIDAVDRQLRPDVVHIRYEIGQDWSGQWAIFFKVLLSDEASIDRNLREMAPKFVWSVSDRLDLPELGLFPHFDFRSQSEQIERNEPAWA*
Ga0182018_1000041423	F022319	GAG	MGVKVYLTPALRPAAMTIQITKPEVEALINQRLRSGGFKDAEDIVWQALQSSPPEAAAAAPKGAEPAKDMVELFAPLRSLNIVIEADRSKDTGRDINV*
Ga0182018_1000041439	F056644	AGGAGG	MYLLLRYPAGILVEAVVLARGRNRMRVAASGIPDAIELRRSGQQWFTEARQPVEFDFLMSDARAVQRISPARPAKVSGAAAAAIH*