Scaffold Ga0182018_10000227

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10000227
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74098
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (78.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F021001	Metagenome / Metatranscriptome	221	Y
F049121	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000022757	F000552	GAGG	MEAMRRKLVWAERQNFRGWACSECAWVFNPLGPPVGESIDEMKTHYEQQRDREFTSHVCAKSPR*
Ga0182018_1000022763	F021001	GGAG	MKRAKQVVFRYNGDPTTEESDLDMDGDKSVPKQGSVIERRGERWKVVQVNMERSAEEPFAVPIFRVFLTNEL*
Ga0182018_100002277	F049121	GAG	MDLDDTRPTFKSANPEVFPAKPVDDQKELAWAFLGLILWSGVVLIGVFGAGYVLGHSIFHLW*