Scaffold Ga0182018

Basic Information
Taxon OID	3300014489 Open in IMG/M
Scaffold ID	Ga0182018_10000214 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014489 Open in IMG/M

Scaffold ID

Ga0182018_10000214 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75913
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (62.32%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

75913

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (62.32%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000482	Metagenome / Metatranscriptome	1089	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F001412	Metagenome / Metatranscriptome	701	Y
F004841	Metagenome / Metatranscriptome	421	Y
F015508	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000021414	F001412	AGGAG	MKLNNLAKTVVLGLAVLLASSAFASNNKGSLLVGEAFEVSGQQLPAGEYQVRWDGTGSTVEISFMQGKKELAKTSAKMVPLDTVSYGDSAVVDHNSGKAAISEIRFSGKKFALVIGPTDKAEMNGTSK*
Ga0182018_1000021417	F000482	N/A	MPFSRAHLAIAFGTAGLLVLTFLGYLYWLGNQGPVLSRSVERDPLTQLPLSITMNPFRDRTIEHIANSFISEMRDGNCRKLLAQWERDYRKKRADFLCNSEAQHPLISWTLVEWEDAPPLTILYYKGNRYSTAAHDATYKDMFSVTEEKKDSGWTVTKYDSFY*
Ga0182018_1000021427	F000548	N/A	MAQTSSEGPRWIGIPVRVFAMTFLFTVLSFAVALLLSILGTVVYSQVKHVAPNLTFAYRHIAFPFAITVGAIVLVLLLVMEIRNYRQRKMLASIERLS*
Ga0182018_1000021447	F015508	AGTAGG	MKQAYLVLAFCVAMLLPAFGQGQSAAPKIDIDNTFVQREFGNQFTLMPDIAPVFGDLDGDGIEDVAIAARCKNPMLDAGEHNYTVMDPYYDFFGYGDPKITTTFSEGDPAHRGLVVLIISGAGPDTWHAATPKAKFVIVNLPYQALSVRKMKLRKRSIEAIYVEEAGEMGDSSALFYDGKKFRYVPMGGNMQ*
Ga0182018_1000021453	F004841	N/A	VKKSDKSRKVPRAPRIRVPNNERALFTIEGTRFVGVLQRLSLTGGSAVLSKGPIPNGTLGDIVMNTVFGKVSADIEFLQTGADGIPLAQAFRFYEMSETSAKRFAAAAKQMEKEGFSDAPEVVQSRLNAPASETIGDLLQSVRRLAATLVANRSAAKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182018_10000214

Overview

Ecosystem & Geography

Associated Families

Sequences