Scaffold Ga0182018_10000097

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10000097
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103184
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (50.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005085	Metagenome / Metatranscriptome	412	Y
F005675	Metagenome / Metatranscriptome	393	Y
F013877	Metagenome / Metatranscriptome	267	Y
F017275	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000009714	F013877	GAGG	MNFINGMEGEEVQVELKYCERCGGLWLRLLGADAVYCGGRRLHLAAMPDPGEAPPRKARRRRKVQAETGDQGDLQSSTRIDYLQGVAAMEVRA*
Ga0182018_1000009743	F005675	AGGAG	MWIRDSERHVHWNWIAIFSYSASLAVSVAIWRGLFRAVERLVR*
Ga0182018_100000975	F017275	N/A	MSLLTQIMPTFWSSYGAAMIALVGFLLNGLLAYGGAQKLAGQREEQRIIDQTWKKEHIAQSNVRDIAIAALQAMGNSNEATVKGIQGQLLLIQTELQALRNRNAGAKG*
Ga0182018_1000009778	F005085	GGAGG	MAKEFDSTPDADLSREEFTSVMTALEPDQIISTKEHHHCPRRRLTRTEMILFWALRIYLVFMVGVVVYQIWTSVR*