Scaffold Ga0182018_10000006

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10000006
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 296442
• Total Scaffold Genes: 288
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F001500	Metagenome / Metatranscriptome	682	Y
F003810	Metagenome / Metatranscriptome	467	Y
F004287	Metagenome / Metatranscriptome	445	Y
F027589	Metagenome	194	Y
F094232	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_10000006207	F001450	AGG	VIQVLRETHEAPAAVQQRVARAGGENRFGEPNFRVVWGGSRLTWIGGRWTDRDAHGNVIREAVELRQVPKYLPLERWHIERWTPPEFYGSPEQWHERTTETEDGMRVPALGPYPARGEYEHCFTLESAVGEFVALTPAASDWIVRAIEWSRRQPRQARRLALAARESARAREFDRAADDILDEGFSS*
Ga0182018_10000006210	F004287	AGGA	LPTDIQTAAHLAQSDVPRPLSHFGSGRRETVIDTQPRGDIAATAAIASISDQDWYISRTHGVYHIPACAKKTAETAGSDAPYALLLITSRGDVIDIGDGRRLPFAISAREIADDLLQDLHDHGIFVCAGARPTPGELVAATSRRDAYYHRLISEGDTLWARGHSFREISDLHRRAAMTIGVEREWAYVPMRLSDCPACGEKVKAGVAVCKHCRAILDPAKAAQHGLGGGAANSTPPTTATPVVAHSAPRK*
Ga0182018_10000006213	F003810	GAGG	MMHLPESAHLWALFAAGHGLHVLKRASLSAGSKISGTKTRVEWLRTNALNLTIRLFVNAAGFSYWVAHPAAATQVIHTLGIPFNLTLEPGHATAAMFGLSGDSMVDWAAAKVPFLQKEVPATSD*
Ga0182018_1000000669	F094232	AGGAG	MLLTPTFLGLLLAGAAFWALIWAAIHKLDDIPYLKEVTSRQEVLDWIEDHKGLTLVITEGVNFLLHGLSPHGVMFTLGGTIINSLMVFGYVSGRQVLAVISEKVASNP*
Ga0182018_1000000671	F001500	N/A	MTDFRVIFIPMPHGNPLAGIVPRVVHPVNDGEVAISQTVEKLEGEVALDAYVKAQVSAPEVVKRITELENCLQRLANAVTEASGDITSYPGLRAAAEEAKLVLKNRLEVDVAKHQVLTELGELQDETTVFKDELRLIKD*
Ga0182018_1000000699	F027589	AGTAG	MDGEGDASNMNALRQSLLAAAALTLAFGPQSAQVQSPQVIEILADHDSRFKMAGQKEPVITVHAGEQVTLRITAIKAKNHNRDGSIHGFSLLRAKDRSRVPGWDFLLKPGAQEFMLNAPAEPGEYVVVCTVICSADHEGMHMRFVVVA*