Scaffold Ga0182001_10059427

Overview

Basic Information

• Taxon OID: 3300014488
• Scaffold ID: Ga0182001_10059427
• Source Dataset Name: Bulk soil microbial communities from Mexico - San Felipe (SF) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1061
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: San Luis Potosi
• Coordinates
  • Lat. (^o): 21.766
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019222	Metagenome / Metatranscriptome	231	Y
F028304	Metagenome / Metatranscriptome	192	Y
F037922	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182001_100594271	F028304	GGA	MARPKESKEDIGRALEDLGWEIQTDKEGSGAVMGAHGKYHLMVSFEGDEPTSILVSYVGRGGEILSRRWPGMEHLPTPRSVVRGLSKGSRAK*
Ga0182001_100594272	F019222	AGGAG	MSEEELEDLAKRGIFVKEYGERTLKVARLYSLLRQECGIVEPWHILALTVCSFEQMHTKEGWEFVLANKQDIEDVGQLFERSNSPQEFTEGLIELKEQDLKEQLEKSELDL*
Ga0182001_100594273	F037922	N/A	RIESVEQAREALTEMDVDQEITAELDEWKATIKKLNDQEFSVSFPDYETGIINLWNASHILLEYGDHDLYVG*