Scaffold Ga0182001_10002673

Overview

Basic Information

• Taxon OID: 3300014488
• Scaffold ID: Ga0182001_10002673
• Source Dataset Name: Bulk soil microbial communities from Mexico - San Felipe (SF) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3523
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: San Luis Potosi
• Coordinates
  • Lat. (^o): 21.766
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003251	Metagenome / Metatranscriptome	497	Y
F023527	Metagenome / Metatranscriptome	209	Y
F069574	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182001_100026731	F023527	AGGAG	VAALYCSCEQKPQIWGEFWWTGKKHVWIFFDDRETSETYAERIVHCPACGQWLEYKNLEALTYQA*
Ga0182001_100026732	F003251	AGGA	VQTKTYTTEAGAKKAAARAYSPAIARLANGRYAWFHAGQPLPQGARTVSRWGINQWRAYE
Ga0182001_100026737	F069574	AGG	MNTVQGSRKDKESGLAPTSLAGTVWPVEKPEILPLGKWIELGRELRSASDEEILSLIGSVVIYLKDQLKDETFPSTHYNYREYVRGYANTILKAAQDEHAKRHSERLG*