Scaffold Ga0182000_10567417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182000_10567417

Scaffold Ga0182000_10567417

Overview

Basic Information
Taxon OID	3300014487 Open in IMG/M
Scaffold ID	Ga0182000_10567417 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Mexico: Magueyal, Guanajuato
Coordinates	Lat. (^o)	21.195	Long. (^o)	-100.439	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F007136	Metagenome	357	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_105674171	F007136	GGAGG	MEGSITARPQDYFALLVGASIVALFSALVATLCIKFEERGAAWFWAALFFGSALVAAYCLGKLL*
Ga0182000_105674172	F004425	AGG	VNSAQLLPAIRELYSRRPEYFHHQAWELVHVLYSLNYTDELVGEAEIAAAVEVARGDDPQWRAA*

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