Scaffold Ga0182000_10045516

Overview

Basic Information

• Taxon OID: 3300014487
• Scaffold ID: Ga0182000_10045516
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004047	Metagenome / Metatranscriptome	455	Y
F009317	Metagenome / Metatranscriptome	319	Y
F033946	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_100455161	F009317	GGAG	MTPEHALPGTRVRVMEHHRVEQRRGLVGTVVARYGGEDYVAVDVRLADGRYRLFWPRDLEEIFPSSPKASWWRLLLGGSAEG*
Ga0182000_100455162	F004047	N/A	MAEEVLMRQAKVLAQRSGHSLEDARRAVSDTEAGRQLRDLAAGKHRHEKAYYWRASVFWERAEERFMHQIGSEALSRFAAARPYTWLESYMERLEGKEARAR*
Ga0182000_100455163	F033946	GAG	MPSEEARIGKRVRIRADHRSKALRGLEGTIEKRWGNPDHVALDVLLDDGHSELFWYHELEEIAERLSSGT*