NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182000_10022244

Scaffold Ga0182000_10022244


Overview

Basic Information
Taxon OID3300014487 Open in IMG/M
Scaffold IDGa0182000_10022244 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1689
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009736Metagenome / Metatranscriptome313Y
F062443Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0182000_100222442F009736GGAGMALNESQQQTLKNWMRSKAVVQCPACGDNRWHFAEAAYLRALLEPGEADLTEDAGVVKLPCANCGYVALFDGETLGIRGMWDKGRGL*
Ga0182000_100222443F062443GGAGGMAGERPPESWVGQGVVIWARAEGRPFEDAHGRIAPGYSQAMGEFSGRLEGINELGATLTTENGQLAFFPWASVARIVLATQ*

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