Scaffold Ga0182000_10000148

Overview

Basic Information

• Taxon OID: 3300014487
• Scaffold ID: Ga0182000_10000148
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13404
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004746	Metagenome / Metatranscriptome	425	Y
F035469	Metagenome / Metatranscriptome	172	Y
F074002	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_1000014810	F035469	N/A	LLVEHESIDGQNGFLLPFGYYLERDADLLILHRSDNSLVAEFSAEGVDFFEVELAVWADAD*
Ga0182000_100001484	F074002	AGG	VRVYDELTSGEAVVDLSPSQALSRAESFLIGQGYVVAHRTLTTLMAERKGSEGPTGQERVPKVVVVAVPQLDGGVRIKVGGDDRGFQGRQGLWKLWAENLPKRH*
Ga0182000_100001489	F004746	GAG	VVHVRHGHWKDEFAGMRGTIQERWGNSEYAAVEVLLEDGSYELFWLADLSEVDERITV*