Scaffold Ga0182004_10190980

Overview

Basic Information

• Taxon OID: 3300014486
• Scaffold ID: Ga0182004_10190980
• Source Dataset Name: Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 713
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Root → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001469	Metagenome	688	Y
F044250	Metagenome	154	Y
F062311	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182004_101909801	F044250	N/A	MHHSLRNHFGRTSWYSWVKRLYWKLGSVSLEIVLILMQGRCMVCMEHTICLEINLDAPNG
Ga0182004_101909802	F001469	GGA	MHPLELLDDVCHMESHFSLFRNSVSFGARYVHGLRLMHHSLRNHFGSTSWYFGEEAQVEARFDLFGDSANLMQDRCMICKEHAICLEINLDAPNGTPS*
Ga0182004_101909803	F062311	N/A	KKPFLTHLFVLLDEEAQVEARFSLFGDSANLDAR*