Scaffold Ga0182004_10045835

Overview

Basic Information

• Taxon OID: 3300014486
• Scaffold ID: Ga0182004_10045835
• Source Dataset Name: Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2655
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Root → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003532	Metagenome	480	Y
F005468	Metagenome	399	Y
F019261	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182004_100458351	F019261	N/A	VLKVNTKKHLDELVKDRDSWKANCIKLWKGVAPILDLISPELPEDQPHAPKLTPVEKAQRVWGWLQQFVKDAEEFAGAHVLSMVRAHYPLVDLSRLEKGYPKEVGPQEAYDLSVGLLDLSSTVIGDINLCGTANPLGQPGSDRSARELSGASNAGDGRPTPAVLTSQAPVAPTPSTGRQDCAGDQPEQ*
Ga0182004_100458352	F003532	AGG	MKTVKYRKRCFEQIEGIVAENKALSAEVDRLRSEAEEKTAEMGAQEGRLLDLNRRLADKERESRGQ*
Ga0182004_100458354	F005468	GGA	MVLMSSSAARCLRYTSSEEEQNRPAPTTEDRVAGKRPLVADPSPVETLPAESSKAPKCRRLVRITDDEEEEEEAAPSLVRRPRSRSDVAPATTGRVTSDPPAPHVEPTRVVETGAQAAW*