Scaffold Ga0182004_10039254

Overview

Basic Information

• Taxon OID: 3300014486
• Scaffold ID: Ga0182004_10039254
• Source Dataset Name: Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3035
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Root → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001469	Metagenome	688	Y
F004724	Metagenome	426	Y
F039415	Metagenome	163	Y
F044250	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182004_100392541	F044250	N/A	MHHSLRNHFGRAIWYSWVKRLMWKLGLVSLEIVLILMQDRCTVCMEHTICLEINLDAPDGTP*
Ga0182004_100392542	F039415	GGA	MHPMELLDDVCHMESRFSLFRNSVSFGLRFVHGLRLMHHSL*
Ga0182004_100392543	F001469	N/A	MESRFGLFRNIVSFGARYVHGLRQMHHSLRNHFGSTCWYFSEDAQVEVWFDLFGDSANPNVR*
Ga0182004_100392546	F004724	N/A	KRLKWKLGSVSLEIVLILMQGRCMVCMEYTICLEINLDAPDGTP*