Scaffold Ga0157380_10795126

Overview

Basic Information

• Taxon OID: 3300014326
• Scaffold ID: Ga0157380_10795126
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 962
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065097	Metagenome	128	N
F068110	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157380_107951261	F068110	GGGGG	MHTTDKNTVLEPRAAMMARLQQIHDHAAGEGTAEGAMIVTLEGYISGIPEFFTNDCHEAFRFRDREQAKSFVAEFGDALLNPQVLDHP*
Ga0157380_107951262	F065097	AGGA	MPNNPNTDYENESASLDAEDWEIALKPYFGYPDAALDLARNLMTIRECLKATPPDVPTAVAALNEAADSLFPLTSFHKGAHDLYRIYIEGRATRAHEALMQSLGVKF*