Scaffold Ga0157380_10000039

Overview

Basic Information

• Taxon OID: 3300014326
• Scaffold ID: Ga0157380_10000039
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78322
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (60.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067624	Metagenome / Metatranscriptome	125	Y
F099937	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157380_1000003917	F099937	GGA	MKLMRSTWTDSRLDDLNDRVGELSSRVDGLQHTTVQGFLALVVIMVSGFMGLAGLIVTKL
Ga0157380_1000003922	F067624	GGA	MKAMRSTWTDSRLDDLNGRVGEVREEVRDVRRDIGDLKRTMIQIGGGLVGTLAMAILGLIGTQL*