Scaffold Ga0163163_10017522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163163_10017522

Scaffold Ga0163163_10017522

Overview

Basic Information
Taxon OID	3300014325 Open in IMG/M
Scaffold ID	Ga0163163_10017522 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6682
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083401	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163163_1001752210	F083401	N/A	YIVVDRAAWLTAYGSTGTVEIKRVYRNSDGVRRTSIWEDDKPEILHVKTEVDLTQAIENNHRLRELHPRRSMNKLVARGVPLTVYEQSVREQWDDKRWAQWLDDPDNAAFRVWQGRVGK*

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