Scaffold Ga0163163_10000018

Overview

Basic Information

• Taxon OID: 3300014325
• Scaffold ID: Ga0163163_10000018
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199503
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (39.04%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013069	Metagenome / Metatranscriptome	274	Y
F078465	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163163_10000018136	F013069	GGA	MIAEQNHGAHSAQVEMRLLVNGESIGIKQMGPDFVLIEPAADHPPGEATIVLQVDQTERRWQVKLPNGISKYSRRVALVRSE*
Ga0163163_1000001858	F078465	GGA	MCSSDLIRLGNCDHSKFKLQEVLMKTMLTTTETGAVNNERRRKPRFDNPNASLFPEATYHGMTQWPTEKQILDVSKKLARINRMAIRAEANGDYFHSGDMAYQMHEIIRATAQLFQSGQRFRRRPNSD*