Scaffold Ga0075355

Basic Information
Taxon OID	3300014322 Open in IMG/M
Scaffold ID	Ga0075355_1000025 Open in IMG/M
Source Dataset Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17491
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

17491

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (69.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: Twitchell Island, San Francisco Bay, California
Coordinates	Lat. (^o)	38.107536	Long. (^o)	-121.649704	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Twitchell Island, San Francisco Bay, California

Coordinates

Lat. (^o)

38.107536

Long. (^o)

-121.649704

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F061612	Metagenome / Metatranscriptome	131	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075355_100002513	F061612	AGGAG	MPRVIHQETMCCGHKRCPTIKVFEDGSIELSDDDTDLGSVGTIKLRPEAANRLAELLFEKK*
Ga0075355_10000253	F091541	N/A	VNLLSGSSSVPGVASIDSTFLINGILQTDILAQGIGVHVFCEPMSFSTIGNAFLAPSTTVAPPPSPDVFTTNDLTQRAMGTTVDADGANFTPAVLEFGVDVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEASGTSEVAIIEFVAAINAQYRAKGSTTIFLPVNFRRVGSVTASSPTTANTGVFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQAQMLQAVTLNNEPLGINVSPDENLSDTTSGVGASTMLEQTLDTTPTLSPQTVNVSRQIFKGGILKLAIKIKGWEMPGGWKAYCETNMPQIMSASKSG*
Ga0075355_10000254	F034408	AGGAG	MAPHDESIRNLALYMPKLAYGMVVGVPRVPFVVDIPIQFSSSTVNAPPVVQNLDNNLTQDTIIERVSYNLFQQNTFPGSPFQSLYFNMLKQSGATGVGVQLQVFGGPKYVVSNQFVDLGNLADVLAVAWPNGWPLPKQSNVKVSAILTQTPVSVPFNVTLTLLGWQLLDKTIDDLSDQEARARLRKLGIDSPDLAILLNP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075355_1000025

Overview

Ecosystem & Geography

Associated Families

Sequences