Scaffold Ga0075348_1094558

Overview

Basic Information

• Taxon OID: 3300014319
• Scaffold ID: Ga0075348_1094558
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 744
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Fairfield, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.224476
  • Long. (^o): -122.019341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000926	Metagenome / Metatranscriptome	832	Y
F008792	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075348_10945581	F000926	AGGAG	MARFQAGQPNGAAVQQLEVLVRTAIFKPANALVGHLLQAAADRIDAAYQPKPGQRRKRRERMTVQGIFGSFPLERDYYYHPGKRQGHHPADAALGLEGGHTPALAR
Ga0075348_10945582	F008792	N/A	MNSTDTARLLAQIAQIQRMERGKLTVMRHGPQGPYYKLQAWENGSNISRYVARDEAAAVQEAIDGFEQFEALIAQYAQAVINQTRAELAARSKKKHYHLRRRSAWPKTRRSDN*