NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075343_1040260

Scaffold Ga0075343_1040260


Overview

Basic Information
Taxon OID3300014317 Open in IMG/M
Scaffold IDGa0075343_1040260 Open in IMG/M
Source Dataset NameNatural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Fairfield, San Francisco Bay, California
CoordinatesLat. (o)38.198971Long. (o)-122.026955Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008521Metagenome / Metatranscriptome332Y
F037436Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0075343_10402601F037436N/ANNAQALESWESEGGAPASEDGSKKGQRPRDLNRITKAQPLTDHKQKPKRT*
Ga0075343_10402603F008521N/APNLSPEKIQSTSFLIWIISGLYLLPMVWFLLSTMVAYGAHETKPWLVPAVVALTVSYGILMLLLWPHEKVSSERRTRAV*

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