Scaffold Ga0075349_1010121

Overview

Basic Information

• Taxon OID: 3300014305
• Scaffold ID: Ga0075349_1010121
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1653
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudomarimonas → Pseudomarimonas arenosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Fairfield, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.224476
  • Long. (^o): -122.019341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012885	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075349_10101211	F012885	GGAG	MPYRIRWEGHGVYRRFYGVVTRQEFRDAYEEMCGDVRYEGIRYLISDYLEARPDPDLTERDLRAQAQLERLRFYDSPDTVHAMVATDPGVVAYIKYYESLRVSPHCMGSFSTIEDARHWIADNPRMGW