Scaffold Ga0134346

Basic Information
Taxon OID	3300014293 Open in IMG/M
Scaffold ID	Ga0134346_1000004 Open in IMG/M
Source Dataset Name	Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The George Washington University (GWU)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014293 Open in IMG/M

Scaffold ID

Ga0134346_1000004 Open in IMG/M

Source Dataset Name

Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

The George Washington University (GWU)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	122515
Total Scaffold Genes	116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (90.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

122515

Total Scaffold Genes

116 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (90.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Maryland
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Maryland

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F105379	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134346_1000004100	F095629	GGAGG	MRELIICACLLGCFGVANAAAPIEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK*
Ga0134346_1000004105	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNIGKITQLEPAKDNPEIAIHRPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGASRINVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0134346_100000438	F099452	AGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLAELRHTEWYKDWFTNDKRNSDLIDLSKFNFRVLERFEKEEYLKDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEVPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*
Ga0134346_100000483	F092232	GGAGG	MNTQAKFIADYNDKNRPKFNDIFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEETLRMAMFSVYLFDHKVTLFEYYLARFGWYETLNKFNFEDVIKLSDHDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFAKSIASYATKKTTMDQLYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDAQLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134346_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences