NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134351_1000675

Scaffold Ga0134351_1000675


Overview

Basic Information
Taxon OID3300014292 Open in IMG/M
Scaffold IDGa0134351_1000675 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_209
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10458
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076191Metagenome118N
F103430Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0134351_100067511F076191AGGAGMKIIAENPAEEALLWRIKVLSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA*
Ga0134351_10006757F103430GAGGMEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDEHSKVMNTLNKLKEVLDQEAIAYQIENKINLI*
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