Scaffold Ga0075324_1029367

Overview

Basic Information

• Taxon OID: 3300014263
• Scaffold ID: Ga0075324_1029367
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Antioch, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.05246563
  • Long. (^o): -121.76914021
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018096	Metagenome / Metatranscriptome	237	Y
F033376	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075324_10293671	F018096	N/A	MEAMKIIMPAADRKPCVCGASLVVSRTSSKGHLTEVWLCASHCGARGLTYEGALRRKVRLDLLSWGDLRRNAQSLIAAYADEEDTCLLQ*
Ga0075324_10293672	F033376	GGTGG	MTAMKSDVEKKIEARVAAAFGDIIPAPESKAGQEILKGAQELVRAVWVGKIYAALPSDKTIISEYFLDAELEQFLNEAVEECHRQICLIAQRAKEEFS*