Scaffold Ga0075315_1072043

Overview

Basic Information

• Taxon OID: 3300014258
• Scaffold ID: Ga0075315_1072043
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Antioch, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.052509
  • Long. (^o): -121.76873
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004115	Metagenome / Metatranscriptome	452	Y
F017667	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075315_10720431	F004115	N/A	NQWCDYCKYRYGVPQKFVVVNDAGEKAEVPRPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP*
Ga0075315_10720432	F017667	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNTCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKE