Scaffold Ga0075320_1004529

Overview

Basic Information

• Taxon OID: 3300014255
• Scaffold ID: Ga0075320_1004529
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1974
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Antioch, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.052509
  • Long. (^o): -121.76873
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076415	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075320_10045291	F076415	N/A	IVSPSVNSLEDLRGKVVACREGPSRNTPIADTFYERARLRLGKDLTLQLPNGDQDAFNLLVGGEAQAALLPRPFGFIAEEKGFKRLNEWPEVVDDPLPITIETTVKLFNEREKDLTAFLAAHSEGIGYFKSHRADAMRILTKQFGHSQTLAQKTLDDYLTCMDEELKVDFNRFEKLLSQVAPESSVNARQVAYEWIAPGATKH*