NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135143_10036

Scaffold Ga0135143_10036


Overview

Basic Information
Taxon OID3300014228 Open in IMG/M
Scaffold IDGa0135143_10036 Open in IMG/M
Source Dataset NameIndoor hospital air microbial communities from San Diego, USA - 211_L1_2014-6-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSan Diego State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)627
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Air → Indoor Air → Unclassified → Unclassified → Indoor Hospital Air → Indoor Hospital Air Microbial Communities From San Diego, Usa

Source Dataset Sampling Location
Location NameUSA: San Diego, California
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046363Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0135143_100361F046363N/AIFAHGFGRDGFRSMVLDASACINMYCNIERNIMKNQAGSPGFGIQGKISVHMCFMCYALALFIFCVLEFVCR*
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