NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172379_10005417

Scaffold Ga0172379_10005417


Overview

Basic Information
Taxon OID3300014208 Open in IMG/M
Scaffold IDGa0172379_10005417 Open in IMG/M
Source Dataset NameGroundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17882
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038776Metagenome / Metatranscriptome165Y
F071164Metagenome122Y
F094469Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0172379_1000541710F094469N/AMNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKYKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINEDLAKSKSALVSSTEEQLALSVQNNPTYKSKMLELAGKELDIRQIVTNLCIAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQAIEHKVTLQVVDQHISVFHDVIRKVLSQMDLESSLYFMEVFNEEFSKLKLPSEKDGPNTEVRLAEAKLLSETINKKINE*
Ga0172379_1000541711F071164N/AMPLRAKEFKEMTMRISEMLTAIASWLESPDNEAILLAEYDDDCLQIVANSCVQAAALLKITAETVEDIEPPEESKITPEAIDNLAALATAFDESGDVELKKQASVIDELLLTIASPPDAVVQRKDLIDQRLDDLKKKYEQPSKDLAETNKIADSEKLIEKSNMTKQIDIHESPLSTRYCPDHAGVQIARIGEHMWQCELDKKTYNFDTGFTLNNGTKVPGGDVANQTQMTNIPFYAIFDTRQNRMGY*
Ga0172379_1000541714F038776N/AMGDVMSKFAINYSSLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDPVEKIASSNWKVSINKISGDLQVAYKGDPLIRVAYNKLGIPRAELNKAEQYLPQKLADNKKLVNALLNELNESAKKEVLSKYPELV*
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