Scaffold Ga0172380_10232623

Overview

Basic Information

• Taxon OID: 3300014205
• Scaffold ID: Ga0172380_10232623
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172380_102326232	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIVERTESGQYWPTEVGAAIIYAVLCKQMLGAGEDDFRSEESQQVMLNRLEEMDLVEQGDESFIITIEGFTTFFTNLAYDCPCREEFLDWLALATAELTDEMEQP*
Ga0172380_102326233	F103501	AGGA	MIKNIVIEGVVSYDVEYDLWCVDEDFIETTISDFENRKVVVTITVI*
Ga0172380_102326234	F064748	AGG	MKKYRFIGNMEDVTPCGNMDEGCIIAGCKGKTWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDGAYSKGGLYLLFDTKGKIWMKASHLKKHFEQSIGYNHETKQSIPLYKKYPYDAEVVEYALVEVKRTPVR