Scaffold Ga0172380_10167309

Overview

Basic Information

• Taxon OID: 3300014205
• Scaffold ID: Ga0172380_10167309
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1739
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069433	Metagenome / Metatranscriptome	124	N
F072819	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172380_101673091	F069433	GGA	MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGVHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWICASINLPSAAEHPYKSANPPVAWDGYVPWDWCVYTPPGLNWGTCEYSGGHNHSAWNCKCNPYSW*
Ga0172380_101673092	F072819	N/A	MVMGMFQDQTKAQEVSFRIARIEGENAVCELVNWCRNNLDELTVQCFTHKRFMSVQALVDALCEVYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI*