Scaffold Ga0172380_10131757

Overview

Basic Information

• Taxon OID: 3300014205
• Scaffold ID: Ga0172380_10131757
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F022996	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172380_101317571	F011397	N/A	FDRPCDGLFFIMENSTPEERMTWGISGRGINAREELQQKIKKGEKYIYQVAKDKGEFKVMCLCFSNYIIIRKYIFKLEDE*
Ga0172380_101317575	F022996	N/A	METIVKFNYAKMKEDIKTKAEEQKFLKNQRKTIKIIGERVIPAKDATYKHMTNREDLRIMYAAYGLARGKNFSQIENHYLEENHPLQKYQKSIDRLLEKYKMLVKVETVE*