NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172381_10625801

Scaffold Ga0172381_10625801


Overview

Basic Information
Taxon OID3300014204 Open in IMG/M
Scaffold IDGa0172381_10625801 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0172381_106258011F065813N/AMIPLISFFGWFDIIIATPFAIYFGYKGIKWIIGKLKNKQPQEEIDTPDVES*
Ga0172381_106258012F073596N/AMNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFVIAFIKDALQYADEIAALSQAQPVQTKGQVIKAVKQDKKISANYKTAFFKEKAKNFNK*

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