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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014204 Open in IMG/M |
| Scaffold ID | Ga0172381_10058178 Open in IMG/M |
| Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3291 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F075591 | Metagenome / Metatranscriptome | 118 | Y |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172381_100581782 | F078142 | GGA | MSFETDAFDAIYESLTIARCRIRIGRTVIAKAICSGIGVNRQSTDEGQFGSIDANVRLLTADEPDGEIKNGTVIEVLQNGKDEKTGWAKARVGGRFVVGGLTRLILEAEHE* |
| Ga0172381_100581784 | F039448 | N/A | MNTTKAIELAMAETIREYAEIGEDVTVRAWQSLESDGSWKENPDRTFPMIDVRCSPPKTDDNESTLAVECAILLGTKTDDDKSHAIIADMYAAVQGVCDNLFSQFRTTTGSTYTVDTEIYDFLTSVVANTSATAFQFGGFTFGDGLAPADDGGINMIGITMVIHYSRSDF* |
| Ga0172381_100581786 | F075591 | AGG | MQDLAKLSELAEAEIEKLRADGIDLTPPDIIEINALGWAVESPETRRLLARGAPVAVGGVYLWPMSLYAQEWFNRVGCNLSDNTRQAYALAYAMAHGRDEGEPLATEGRAAEKIVTRWAKSLKCTFGELNVAISQILQQDEDHEQPPGEDTGGMSMGDFSAFLAAACPGSDPDFWERRCAAGYTHAVLSAIVRQNSAEGKKTLADPRLKAERALGYKIEQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |