Scaffold Ga0172381_10030328

Overview

Basic Information

• Taxon OID: 3300014204
• Scaffold ID: Ga0172381_10030328
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4800
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F075591	Metagenome / Metatranscriptome	118	Y
F078142	Metagenome / Metatranscriptome	116	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172381_100303282	F075591	AGG	MQDLAKLSELAEAEIESLRADGIDLTPAEIIEINALGWAVESPESRRLLARGAPVEIGGVYLWPMSLYAQEWFDRVGCHLSSNTHQAYALAYAMCHGRDEGEPLAIEGRTAEKTVSRWANSLKCTFGELNVAISQVLQQDEEHEQPPSETGGMPIGDFSALLASACGGDPDFWERRCSAGYAYAVLDCITRQNSAEGRKTIADPRIKADRALGFAINKIKKSREETTP*
Ga0172381_100303283	F098516	AGGAGG	MVIDKASSFGAITDHFDILTTVHGSGTLADILSLVASSKKPRAQNRADAQDENLDIAASAYHGNTAKEISEVSCTYALKSGSLPLTELSIGELAAQVFASSIAVTTANGAWPQIVVSGFLGLETMVAPTGKTNKFILPAITINGMKQAQLLGFTIAAGGRLTGSGITFNCEMAEQGDGLGEPVAHGVSGGTGSVTAEFVKVEATQPDWTLGAVLTGTTFLAAVTQEPGAEEGQAAWHTTSAEAQFILTRGTAA*
Ga0172381_100303284	F039448	N/A	MNVPKAVELAMAEVIRKYAEMGEDVTIRAWQSLPSDGSWKIDPDRKFPMIDVRCGPPKTDDNESTRTVECSILMGTKTDDDKDHAFISAMYEAVQGVCDNLFSQFHTTSGSTYTADTEIADFLASVVKNATAAKFNFGGFTFGEGLSPADDGGVNMIGITMIVHFGRSDF*
Ga0172381_100303286	F078142	AGGTGG	MSFETEGFDAIYDALILARCQLRIGRKVIAKAICAGIGINRQSTNEGQFGGIEANVRLLAADEPDGEIKNGTVIEILQDGKDVKTGWIKARVGGRFTAGGLTRLVLEAVNE*