Scaffold Ga0172381_10003977

Overview

Basic Information

• Taxon OID: 3300014204
• Scaffold ID: Ga0172381_10003977
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15452
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039402	Metagenome / Metatranscriptome	164	Y
F044014	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172381_1000397710	F044014	AGGAG	VSVEDYKPRFSFEITEEQKQRADKVLETYGLRRAIFGAILDDVLDLIEEHGGMAIGAILSSKIKPREVIPSMKKANGRKKK*
Ga0172381_1000397714	F039402	AGGAGG	MALTDYSDLEKDIKDAPEPKTLPRGSEVKARIINVREGVSDKNDAQWYQPIFDVPSDPMVMEFNDFFWDLSDRDKLDAKQAQRSLYKFQKFATAFGLDYSRPFDWIDDLIGLEGWVILGVKKSEEFGDQNSVTKYVVKKK*