Basic Information | |
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Taxon OID | 3300014204 Open in IMG/M |
Scaffold ID | Ga0172381_10002426 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20561 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (90.48%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039402 | Metagenome / Metatranscriptome | 164 | Y |
F042954 | Metagenome / Metatranscriptome | 157 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172381_1000242612 | F039402 | AGGAGG | MSLTDYSNIEKEIRDVPEPIILPKGSEEKARIIAVRSGVSDKNGAAWYQPVFDVPAKPLAKEFNGFFWDLADRNKLEDKQAVNAMRDFKKFAECFGLDFSKPFSWEDDLVGLEGWVILGIKKSDEYGDQNIISSYVKK* |
Ga0172381_1000242639 | F042954 | N/A | MSENNINIQRREGLYGFEFRDVDLRRAEEGERKTYNIKSLWQRSHEIINLAAQGYKGTDIAEILNITPACVSQTLNSDLGKVKLSEVRQDRDNEAKKNLEKIRILTSKALATYHEIFDDESGQVNLKDKKEVADTVVLELSGLRVPTKVQSQSVTTMLTPADIEAFKNRGMKAAASVGIEIEVESKTVEPKGEEFPSVESTNNQNIDDLFNDLVEATL* |
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