Basic Information | |
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Taxon OID | 3300014204 Open in IMG/M |
Scaffold ID | Ga0172381_10000553 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45057 |
Total Scaffold Genes | 102 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011397 | Metagenome / Metatranscriptome | 291 | Y |
F020177 | Metagenome / Metatranscriptome | 225 | Y |
F022996 | Metagenome | 212 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172381_1000055355 | F011397 | N/A | MPNDFELLKRTYPISEFNRFCDGYHYIMKNSTPEERLEWDINVNDLQKIIKEGEKYIYQVAKMGKEFKTMCLCFENYEIIRKNIFKFEDD* |
Ga0172381_1000055360 | F022996 | N/A | METIIKINVLKIKEEIKTKVELQKFYRNQMKTVHIIGERKMEASQARYKHFTNREDLRILYAVYGIARGKKYSQIENHYPEENHPLNNYQKSIDRILEKYEYLEEIPVLEKI* |
Ga0172381_1000055363 | F020177 | AGTAG | MENNFDLNNTYWDRLKGYVTELRVDARWILRQVVSEKPLGSLRVVSHPDLPPGHLRAFFTYVISIRKKTKEEKIKTIEDYQMEINELEVYSISDDIKTENIIYEASFKDLEDIFGVKIFD |
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