Basic Information | |
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Taxon OID | 3300014204 Open in IMG/M |
Scaffold ID | Ga0172381_10000039 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 138890 |
Total Scaffold Genes | 132 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (19.70%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: IMG/M) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002824 | Metagenome | 527 | Y |
F040985 | Metagenome | 160 | Y |
F041560 | Metagenome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172381_1000003958 | F040985 | N/A | MIDITESPNFISFAGNPVIYEACSDSYLISLGSRASFELVVSAVDTSIGHSFKLQFAGKTLEFKTAGLTDFDGLLFEVGSFGQTFNDFANSIYQCFLENYDIQKYFNVTLDGPGTSNRKIHLQAKNSGTDGSIVFSNVNVIGVGQGVNTPGTDDQYQDFFGILCLVRDSANNPIGEDIKPADFIGCARFDISDYIQSKFTAWEMQRFEFPELSGNVKSHGWDYLLKYRISFAESIAGNVKGLQSNGWKYALAGGLNHELLTSLNEKYLEYFSIAANKQKFLSWLPLAKYSRSGVMEKLFFLFQDNPSAVQYRMVVIVNFTDGSHKVINATPQVVYPAFSVIEFKVGFDHLDLVNVQPGKVVRSWEVFLMDSNDDYLSERRVFNNDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLFGSIVREEKYSFFNAPAKQFSAKETEICKANSGWISLEEKNCLRELLLSLEAYEQIGKELFQIVVKSAKITPFLKDGEYMYNLEIEYERSYQNSFFSVHVPESSANPVILPQPLTWDNIEVSFDDMEITFDQIEY* |
Ga0172381_1000003959 | F041560 | N/A | MLSILIGDQSLDLNDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNVSILGWKNRIASTRSIYETFEGSIRWNGMVLYTGQIKIKTAGEKTFEGTLYINKGNFNFEVKDIFLNRVDLGMMSFASDQQAVDYFNWSLTHFYPEVDFSMPEISNPTFYDPPATNPELMSYNYIFPDGWLRKYTTDGQCRTILTPFLYLKFVLNKLAEIFGYRLQDEFFTSSIELSRLVVYNSVSLSEVLFGLQKLYYCRLVPNVKVSEFIAGLEKWFNCSFHVDTRQRVIRIVGNKEVLLRSEIVEFSKNILSLTQEIPEQITGFRFLLGPDAGDMAYQAQLDAEKGITEMIKGAVQHFSDIPPYPFTWLGDIYYIVDTNTWWQLAVNPYTFLIEWQQLPAGPMLTDKFFYKWGDEKNKFETIFSSLPDKYISVNCGNLGADYQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYPGPNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKNLDFTKRYRINGINYLISEISVTLNKSSIKSAQLKCFTSP* |
Ga0172381_1000003991 | F002824 | AGCAG | MTKITAPVLKPTNGGASKEENAVLAAAKTVLNPEENKTEEQKPLLKVELEKPVVPAPEPVKEMTLMEKILKVENLQLVIEKRAKLVQTRSELERFQTASNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLRSSFDASISDVEGKIKF* |
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