Scaffold Ga0172381_10000039

Overview

Basic Information

• Taxon OID: 3300014204
• Scaffold ID: Ga0172381_10000039
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138890
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (19.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172381_1000003958	F040985	N/A	MIDITESPNFISFAGNPVIYEACSDSYLISLGSRASFELVVSAVDTSIGHSFKLQFAGKTLEFKTAGLTDFDGLLFEVGSFGQTFNDFANSIYQCFLENYDIQKYFNVTLDGPGTSNRKIHLQAKNSGTDGSIVFSNVNVIGVGQGVNTPGTDDQYQDFFGILCLVRDSANNPIGEDIKPADFIGCARFDISDYIQSKFTAWEMQRFEFPELSGNVKSHGWDYLLKYRISFAESIAGNVKGLQSNGWKYALAGGLNHELLTSLNEKYLEYFSIAANKQKFLSWLPLAKYSRSGVMEKLFFLFQDNPSAVQYRMVVIVNFTDGSHKVINATPQVVYPAFSVIEFKVGFDHLDLVNVQPGKVVRSWEVFLMDSNDDYLSERRVFNNDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLFGSIVREEKYSFFNAPAKQFSAKETEICKANSGWISLEEKNCLRELLLSLEAYEQIGKELFQIVVKSAKITPFLKDGEYMYNLEIEYERSYQNSFFSVHVPESSANPVILPQPLTWDNIEVSFDDMEITFDQIEY*
Ga0172381_1000003959	F041560	N/A	MLSILIGDQSLDLNDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNVSILGWKNRIASTRSIYETFEGSIRWNGMVLYTGQIKIKTAGEKTFEGTLYINKGNFNFEVKDIFLNRVDLGMMSFASDQQAVDYFNWSLTHFYPEVDFSMPEISNPTFYDPPATNPELMSYNYIFPDGWLRKYTTDGQCRTILTPFLYLKFVLNKLAEIFGYRLQDEFFTSSIELSRLVVYNSVSLSEVLFGLQKLYYCRLVPNVKVSEFIAGLEKWFNCSFHVDTRQRVIRIVGNKEVLLRSEIVEFSKNILSLTQEIPEQITGFRFLLGPDAGDMAYQAQLDAEKGITEMIKGAVQHFSDIPPYPFTWLGDIYYIVDTNTWWQLAVNPYTFLIEWQQLPAGPMLTDKFFYKWGDEKNKFETIFSSLPDKYISVNCGNLGADYQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYPGPNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKNLDFTKRYRINGINYLISEISVTLNKSSIKSAQLKCFTSP*
Ga0172381_1000003991	F002824	AGCAG	MTKITAPVLKPTNGGASKEENAVLAAAKTVLNPEENKTEEQKPLLKVELEKPVVPAPEPVKEMTLMEKILKVENLQLVIEKRAKLVQTRSELERFQTASNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLRSSFDASISDVEGKIKF*