NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0172378_10883768

Scaffold Ga0172378_10883768


Overview

Basic Information
Taxon OID3300014203 Open in IMG/M
Scaffold IDGa0172378_10883768 Open in IMG/M
Source Dataset NameGroundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078879Metagenome / Metatranscriptome116N
F103501Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0172378_108837681F078879AGGMTPDVSDEVKEGYELLEGIGIVERTESGQYCPTEVGAAIIYAVLCKQMLGADADDFKSEESQQVMMNRLEEMDLVEQVDESFIITIEGFTTFFTNLTYDCSYREEFLDWLALATAELAEEMEQP*
Ga0172378_108837682F103501AGGAMVKNIILEGVVYYDVKYDLWCVGEDYIENIISDFEDKKVLVTITEI*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.