NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172378_10741155

Scaffold Ga0172378_10741155


Overview

Basic Information
Taxon OID3300014203 Open in IMG/M
Scaffold IDGa0172378_10741155 Open in IMG/M
Source Dataset NameGroundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078675Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0172378_107411552F078675N/AIPTKRKTTSKNISGMYRLTARETRVLTAKEKIMPDNFGRMTSDEAPQSLKDFCFPKQEQKEESIHKHTPGPWTIYNHAGTDSGHYDGYLKSDIRAGADLIHIRQSVAGNTFPRLAANVRLMAAAPSMHDALWAIANMQVQEETDKGEVLALCISIARLELEKCSTAGK*

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