NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181535_10027507

Scaffold Ga0181535_10027507


Overview

Basic Information
Taxon OID3300014199 Open in IMG/M
Scaffold IDGa0181535_10027507 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4327
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F012316Metagenome281Y
F047435Metagenome149N
F093078Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181535_100275075F012316GAGGMSTSIIDQPAGPKRRCGIVWEELRSLGTRGISTVNLWRRHQDQNALERSLARIIETANGHRAKGLSKGSPAYIVLRETADAKIQVFSSKWSVDVAAVKAQAPALADLDSLCVPDTQIPAGLKLLVGLLGMIVSLVLLGAASGLVHAGHDWVMRFVGR*
Ga0181535_100275076F005296GGAGMAPWLLWFLPSFEAGFWSALIAGKLRDRGKTRELLVYGSRSRTSLPLIDKRLRKAAGTPTKSQAFVAGRIAAGLRWLANTRAMEYAILLGLKQVWPKGQTISTEVTMCL*
Ga0181535_100275077F009261GGGGGMILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMHARKKHAHNVLKGVA*
Ga0181535_100275078F047435AGGAGMSKLTLLAVLGLIYIGVVRLAYFAISVFFILFFGMSVWELIRTARQPAKHPFAAQ*
Ga0181535_100275079F093078AGGAGMKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLESVRCQIFYRIRQLDDYLARVYTTAFFRMIPSSRKDRSNVSEKQSSGSDLPHDSGVIPAE*
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